Can you please describe what error you get when installing oligo on R-3.1.1? I have it running just fine on R 3.1.1 (on Mac OS X) and on R 3.1.2 (on Ubuntu). On Mon Jan 19 2015 at 3:15:43 PM WATSON Mick [bioc] < noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User WATSON Mick <https: support.bioconductor.org="" u="" 5575=""/> wrote Question: > Reading Affymetrix data from pd.hugene.2.0.st using oligo/affy > <https: support.bioconductor.org="" p="" 64214=""/>: > > Hi > > Please accept my apologies if this is obvious, it's been some time since I > have worked with microarray data. > > I have some Affymetrix CEL files that use the HuGene 2.0 ST design ( > http://www.bioconductor.org/packages/release/data/annotation/html/pd.hugene.2.0.st.html) > . > > Running R 3.1.1, I tried reading these using the Affy package, but Affy > refused and recommended I use the oligo or xps package. But neither oligo > nor xps install in R 3.1.1 so I downgraded to R 2.15.2. > > Now I can install oligo, but it asks for the annotation package - > pd.hugene.2.0.st - which is only available for R >= 3.1.0. > > My question is - how do I work with HuGene 2.0 ST arrays in Bioconductor? > I just want to extract RMA values for input into limma. > > Many thanks > > Mick > ------------------------------ > > You may reply via email or visit Reading Affymetrix data from pd.hugene.2.0.st using oligo/affy >