We are processing a number of arrays from the GPL13158 platform, aka Affymetrix HT HG-U133+ PM Array Plate, in a machine-learning/classification context, so we wish to use fRMA for normalization. However, this platform is different enough from ordinary HG-U133 arrays, that I'm not sure if the frma vectors would still apply, and if so, how one would apply them. (Specifically, the mismatch probes are removed, and some probesets have been reduced from 11 to 9 or 10 probes.) This platform also comes in plates of 16 or 24 arrays, which could affect how one defines "batches".
So my question is: Are there frma vectors available for this platform; or, can I obtain them easily by subsetting from a related platform; or, should I just generate my own vectors from the available GEO data and/or just my own data?