I have a RNA-seq experiment data and I want to extract differentially expressed miRNAs for the data. The data is from two groups(cell type1 and cell type 2; both have biological duplicates) and I want to know which miRNAs are differentially expressed between these two groups.
Which approach of edgeR should I use?
The classic one with exactTest function or the GLM approach. What's the difference between the exactTest and GLM results?
Thank you for your reply