Bioconductor Release 1.5 Archive
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@benjamin-haibe-kains-955
Last seen 9.7 years ago
Hi, Is it exist a single "big" archive of bioc release 1.5 ? I would want to install the new release (with all the packages of bioc -> libName="all") on several machines ... Have you an idea ? I think that it's possible to take the file files from .../site-library of one installation and simply copy them into the directory of another machine. Is it correct or it is not so obvious ? Thanks for your help -- Benjamin Haibe-Kains [http://www.ulb.ac.be/di/map/bhaibeka/] PhD student in the Machine Learning Group (MLG) [http://www.ulb.ac.be/di/mlg/] Universite Libre de Bruxelles (ULB) E-mail: bhaibeka@ulb.ac.be MicroArray Unity [http://www.bordet.be/servmed/array/index.htm] Institut Jules Bordet (IJB) E-mail: benjamin.haibekains@bordet.be
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@benjamin-haibe-kains-955
Last seen 9.7 years ago
Hi, Unfortunately this way does not work with two different computer platforms, let say a pentium III and a powerpc. It would be useful to have a big package or a set of several packages that can be compiled in the fly. For Muhammad Subianto : It seems that the rpms for bioconductor contains only the getBioC script ... Jeff Gentry wrote: >There isn't really - it would be too big. > >Personally what I would do is use getBioC to install everything to a >separate directory (using destdir) and then just copy that dir around. > >On Tue, 2 Nov 2004, Benjamin Haibe-Kains wrote: > > > >>Hi, >> >>Is it exist a single "big" archive of bioc release 1.5 ? >> >>I would want to install the new release (with all the packages of bioc >>-> libName="all") on several machines ... Have you an idea ? I think >>that it's possible to take the file files from .../site-library of one >>installation and simply copy them into the directory of another machine. >>Is it correct or it is not so obvious ? >> >>Thanks for your help >> >>-- >>Benjamin Haibe-Kains >> [http://www.ulb.ac.be/di/map/bhaibeka/] >> >> >>PhD student in the Machine Learning Group (MLG) >> [http://www.ulb.ac.be/di/mlg/] >>Universite Libre de Bruxelles (ULB) >>E-mail: bhaibeka@ulb.ac.be >> >>MicroArray Unity >> [http://www.bordet.be/servmed/array/index.htm] >>Institut Jules Bordet (IJB) >>E-mail: benjamin.haibekains@bordet.be >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor@stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >> >> >> > > > > -- Benjamin Haibe-Kains [http://www.ulb.ac.be/di/map/bhaibeka/] PhD student in the Machine Learning Group (MLG) [http://www.ulb.ac.be/di/mlg/] Universite Libre de Bruxelles (ULB) E-mail: bhaibeka@ulb.ac.be MicroArray Unity [http://www.bordet.be/servmed/array/index.htm] Institut Jules Bordet (IJB) E-mail: benjamin.haibekains@bordet.be
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rgentleman ★ 5.5k
@rgentleman-7725
Last seen 9.0 years ago
United States
On Tue, Nov 02, 2004 at 08:03:12PM +0100, Benjamin Haibe-Kains wrote: > Hi, > > Unfortunately this way does not work with two different computer > platforms, let say a pentium III and a powerpc. It would be useful to > have a big package or a set of several packages that can be compiled in > the fly. It really is just way to big, what about mirroring our site (as other do) and building off of that? And in your example, you would need to have all computers set up for source builds (btw). If that is true then a simple download script will get all of those. I am pretty sure that there are standard tools that will get this done for you, without building a big single bundle - and it really is not such a good way, as you don't want that - you would need to get a whole new one of everything for a small single change; not very good use of bandwidth. Robert > > For Muhammad Subianto : It seems that the rpms for bioconductor contains > only the getBioC script ... > > Jeff Gentry wrote: > > >There isn't really - it would be too big. > > > >Personally what I would do is use getBioC to install everything to a > >separate directory (using destdir) and then just copy that dir around. > > > >On Tue, 2 Nov 2004, Benjamin Haibe-Kains wrote: > > > > > > > >>Hi, > >> > >>Is it exist a single "big" archive of bioc release 1.5 ? > >> > >>I would want to install the new release (with all the packages of bioc > >>-> libName="all") on several machines ... Have you an idea ? I think > >>that it's possible to take the file files from .../site-library of one > >>installation and simply copy them into the directory of another machine. > >>Is it correct or it is not so obvious ? > >> > >>Thanks for your help > >> > >>-- > >>Benjamin Haibe-Kains > >> [http://www.ulb.ac.be/di/map/bhaibeka/] > >> > >> > >>PhD student in the Machine Learning Group (MLG) > >> [http://www.ulb.ac.be/di/mlg/] > >>Universite Libre de Bruxelles (ULB) > >>E-mail: bhaibeka@ulb.ac.be > >> > >>MicroArray Unity > >> [http://www.bordet.be/servmed/array/index.htm] > >>Institut Jules Bordet (IJB) > >>E-mail: benjamin.haibekains@bordet.be > >> > >>_______________________________________________ > >>Bioconductor mailing list > >>Bioconductor@stat.math.ethz.ch > >>https://stat.ethz.ch/mailman/listinfo/bioconductor > >> > >> > >> > > > > > > > > > > -- > Benjamin Haibe-Kains > [http://www.ulb.ac.be/di/map/bhaibeka/] > > > PhD student in the Machine Learning Group (MLG) > [http://www.ulb.ac.be/di/mlg/] > Universite Libre de Bruxelles (ULB) > E-mail: bhaibeka@ulb.ac.be > > MicroArray Unity > [http://www.bordet.be/servmed/array/index.htm] > Institut Jules Bordet (IJB) > E-mail: benjamin.haibekains@bordet.be > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+
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I think that mirroring the bioconductor repository is the best thing to do in my case. Thanks a lot for your help benjamin Robert Gentleman wrote: >On Tue, Nov 02, 2004 at 08:03:12PM +0100, Benjamin Haibe-Kains wrote: > > >>Hi, >> >>Unfortunately this way does not work with two different computer >>platforms, let say a pentium III and a powerpc. It would be useful to >>have a big package or a set of several packages that can be compiled in >>the fly. >> >> > > It really is just way to big, what about mirroring our site (as > other do) and building off of that? And in your example, you would > need to have all computers set up for source builds (btw). If that > is true then a simple download script will get all of those. > > I am pretty sure that there are standard tools that will get this > done for you, without building a big single bundle - and it really > is not such a good way, as you don't want that - you would need to > get a whole new one of everything for a small single change; not > very good use of bandwidth. > > Robert > > > > >>For Muhammad Subianto : It seems that the rpms for bioconductor contains >>only the getBioC script ... >> >>Jeff Gentry wrote: >> >> >> >>>There isn't really - it would be too big. >>> >>>Personally what I would do is use getBioC to install everything to a >>>separate directory (using destdir) and then just copy that dir around. >>> >>>On Tue, 2 Nov 2004, Benjamin Haibe-Kains wrote: >>> >>> >>> >>> >>> >>>>Hi, >>>> >>>>Is it exist a single "big" archive of bioc release 1.5 ? >>>> >>>>I would want to install the new release (with all the packages of bioc >>>>-> libName="all") on several machines ... Have you an idea ? I think >>>>that it's possible to take the file files from .../site-library of one >>>>installation and simply copy them into the directory of another machine. >>>>Is it correct or it is not so obvious ? >>>> >>>>Thanks for your help >>>> >>>>-- >>>>Benjamin Haibe-Kains >>>> [http://www.ulb.ac.be/di/map/bhaibeka/] >>>> >>>> >>>>PhD student in the Machine Learning Group (MLG) >>>> [http://www.ulb.ac.be/di/mlg/] >>>>Universite Libre de Bruxelles (ULB) >>>>E-mail: bhaibeka@ulb.ac.be >>>> >>>>MicroArray Unity >>>> [http://www.bordet.be/servmed/array/index.htm] >>>>Institut Jules Bordet (IJB) >>>>E-mail: benjamin.haibekains@bordet.be >>>> >>>>_______________________________________________ >>>>Bioconductor mailing list >>>>Bioconductor@stat.math.ethz.ch >>>>https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> >>>> >>>> >>>> >>>> >>> >>> >>> >>> >>-- >>Benjamin Haibe-Kains >> [http://www.ulb.ac.be/di/map/bhaibeka/] >> >> >>PhD student in the Machine Learning Group (MLG) >> [http://www.ulb.ac.be/di/mlg/] >>Universite Libre de Bruxelles (ULB) >>E-mail: bhaibeka@ulb.ac.be >> >>MicroArray Unity >> [http://www.bordet.be/servmed/array/index.htm] >>Institut Jules Bordet (IJB) >>E-mail: benjamin.haibekains@bordet.be >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor@stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >> >> > > > -- Benjamin Haibe-Kains [http://www.ulb.ac.be/di/map/bhaibeka/] PhD student in the Machine Learning Group (MLG) [http://www.ulb.ac.be/di/mlg/] Universite Libre de Bruxelles (ULB) E-mail: bhaibeka@ulb.ac.be MicroArray Unity [http://www.bordet.be/servmed/array/index.htm] Institut Jules Bordet (IJB) E-mail: benjamin.haibekains@bordet.be
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