Hi,
I am using the cellHTS2 package for my HTS screening. While trying to understand the file formats that I need to generate for the purpose, I tried to use the demo package files (cellHTS) that you have uploaded. While I tried to use the plateconf file that exists in the demo version, I get the following error
> x
cellHTS (storageMode: lockedEnvironment)
assayData: 21888 features, 2 samples
element names: Channel 1
phenoData
sampleNames: 1 2
varLabels: replicate assay
varMetadata: labelDescription channel
featureData
featureNames: 1 2 ... 21888 (21888 total)
fvarLabels: plate well controlStatus
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
state: configured = FALSE
normalized = FALSE
scored = FALSE
annotated = FALSE
Number of plates: 57
Plate dimension: nrow = 16, ncol = 24
Number of batches: 1
> x<-configure(x, descripFile="Description.txt", confFile="Plateconf.txt",path=datapath)
Error in (function (filename, path, nrPlate, nrWpP, ...) :
Could not find all expected header rows ('Wells' and 'Plates') in plate configuration file 'Plateconf.txt'.
While I have modified the existing plateconf file to include the wells and plates.
Wells 384
Plates 57
Plate Well Content
1 A01 other
1 A02 other
1 A03 sample
1 A04 sample
1 A05 sample
1 A06 sample
1 A07 sample
1 A08 sample
1 A09 sample
1 A10 sample
1 A11 sample
1 A12 sample