package ‘ComplexHeatmap’ is not available
2
0
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@duyguozcelik-7576
Last seen 9.4 years ago
Turkey

I am trying to install ComplexHeatmap package of bioconductor. I use R version 3.1.3 (2015-03-09).

My script:

source("http://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

install.packages('circlize')
install.packages('colorspace')
install.packages('GetoptLong')

Output:

Warning message:
package ‘ComplexHeatmap’ is not available (as a binary package for R version 3.1.3) 

Also i want to download windows binaries from http://bioconductor.jp/packages/devel/bioc/html/ComplexHeatmap.html, but link gives not found error. Could you fix the problem?

software error package • 4.0k views
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Entering edit mode
Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 3 months ago
United States

ComplexHeatmap is only available in the devel version of Bioconductor. This means in order to run it you need to install R-rc (release candidate). You could also wait until Friday (April 17) and then install the newly released version of R (3.2.0) .

The mirror at bioconductor.jp appears to be incomplete or out of date; I will contact its maintainer. Another mirror (such as bioconductor.org) will not have this issue. However, you do not want to be downloading devel binaries and installing them in the release version of R. See above.

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Entering edit mode
Guangchuang Yu ★ 1.2k
@guangchuang-yu-5419
Last seen 10 weeks ago
China/Guangzhou/Southern Medical Univer…

Many new r/bioconductor users have this issue. I think it's a good idea to shown more detail info when pkg is only available in devel branch.

 

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