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package
•
reset
1
vote
5
replies
1.5k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 6 weeks ago by
slizchap
• 0
0
votes
1
reply
244
views
DESeq use in lipidomic analysis
DESeq2
package
Lipidomics
updated 9 weeks ago by
Michael Love
43k • written 10 weeks ago by
泓宇
• 0
1
vote
4
replies
1.2k
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 23 months ago by
Hervé Pagès
16k • written 24 months ago by
Manish
• 0
3
votes
2
replies
3.2k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
2.3 years ago
m-bihie
▴ 10
0
votes
3
replies
4.2k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
2.9 years ago
elmfinds
• 0
2
votes
7
replies
8.5k
views
Installing Local packages in Bioconductor
package
updated 21 months ago by
Boxun
• 0 • written 3.0 years ago by
BioC123
• 0
3
votes
3
replies
1.4k
views
Package fail to build
package
OpenStats
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
hamedhm
• 0
0
votes
2
replies
1.3k
views
Forking a package/install from source
install
package
fork
bugfix
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
Jeff
• 0
0
votes
3
replies
3.2k
views
More Bioconductor Package Installation Problems
package
symlinks
directories
installation
Dropbox
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
jose
▴ 10
0
votes
1
reply
1.8k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA
package
annotation
updated 3.3 years ago by
shepherl
4.1k • written 3.3 years ago by
mathavanbioinfo
▴ 20
0
votes
6
replies
7.9k
views
installing older versions of packages
package
3.9 years ago
zuljiamel1991
▴ 10
0
votes
2
replies
1.2k
views
Confusion error from automated checks for package submission
package
submiss
Submission
updated 4.0 years ago by
Hervé Pagès
16k • written 4.1 years ago by
sara.stankiewicz
• 0
1
vote
1
reply
1.4k
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 4.1 years ago by
shepherl
4.1k • written 4.1 years ago by
ch_el
▴ 10
2
votes
4
replies
1.5k
views
Bioconductor package development
package
R
software
development
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
Dany
• 0
2
votes
8
replies
5.0k
views
Which R version is needed for tximport package?
tximport
package
R version
install tximport
4.7 years ago
harelarik
▴ 60
0
votes
1
reply
2.4k
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
dylangagler
• 0
0
votes
2
replies
991
views
New package function redistribution
package
license
C
R
5.1 years ago
adam.eleni1
• 0
3
votes
3
replies
1.8k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
DcL-A
• 0
0
votes
1
reply
1.3k
views
I have installed bioconductor, R still asks me to install it
bioconductor
biocLite
GEOquery
package
updated 5.3 years ago by
Steve Lianoglou
★ 13k • written 5.3 years ago by
luhan.ni
• 0
0
votes
1
reply
1.0k
views
Package not found bioconductor gCMAP
microarray
cmap
package
gCMAP
gCAMPWeb
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
bastien.chassagnol
• 0
0
votes
4
replies
1.3k
views
CDF still not found
CDF
Package
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
ekl
• 0
0
votes
1
reply
1.2k
views
Submitting R package in Bioconductor with Plink and vcftools Dependencies
R
package
dependencies
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
MAPK
• 0
1
vote
2
replies
1.1k
views
Gallus gallus package genome update release
genome
novel
package
release
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
pertille
• 0
1
vote
3
replies
1.7k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 6.5 years ago by
Wolfgang Huber
★ 13k • written 6.5 years ago by
shepherl
4.1k
0
votes
0
replies
1.2k
views
Pathview input error: non-numeric variable in data frame
pathview
kegg
pathways
package
6.6 years ago
anc.informatics
• 0
2
votes
1
reply
1.2k
views
Curated Data Package in Bioconductor
package
data
6.7 years ago
divyswar01
• 0
2
votes
3
replies
1.7k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
6.8 years ago
shepherl
4.1k
1
vote
6
replies
3.4k
views
how to create a NEWS file in R package
news
package
updated 6.8 years ago by
ahlammajid352
• 0 • written 6.8 years ago by
xyluo1991
• 0
1
vote
4
replies
5.3k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 7.0 years ago by
Mike Smith
★ 6.6k • written 7.0 years ago by
nereidaramirez
• 0
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages for Bioc3.8
package
deprecate
release
news
News
7.0 years ago
shepherl
4.1k
1
vote
2
replies
1.3k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 7.0 years ago by
emmascottgm
• 0 • written 7.0 years ago by
rcavalca
▴ 140
0
votes
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 7.1 years ago by
shepherl
4.1k
0
votes
0
replies
1.2k
views
News:
Release Deadline: Passing R CMD build and R CMD check
package
build
build/check error
check
release
News
7.1 years ago
shepherl
4.1k
12
votes
3
replies
6.6k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
7.2 years ago • updated 7.1 years ago
lloyd.izard
▴ 80
1
vote
5
replies
2.7k
views
Tissue Specificity R-package
tissue
specificity
r
package
package development
updated 7.2 years ago by
jaro.slamecka
▴ 140 • written 7.2 years ago by
BioinfGuru
▴ 70
0
votes
2
replies
1.9k
views
GOenrichmentAnalysis of WGCNA mocules in Zea mays
annotation
wgcna
package
7.2 years ago
j.baldauf
• 0
3
votes
2
replies
1.2k
views
Prevent "New version" message to appear
package
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
nick
▴ 10
0
votes
2
replies
2.5k
views
Creating a qPCRset object from a text file
qPCRset object
nondetects
r
package
txt
updated 19 months ago by
Nat.Nataren
• 0 • written 7.3 years ago by
s.m.may
• 0
0
votes
1
reply
1.5k
views
Error in export ifelse from IRanges
iranges
ifelse
package
namespace
export
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
dalibor.miklik
• 0
1
vote
2
replies
1.5k
views
R packages old versions
R
deseq2
package
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
minie
• 0
1
vote
1
reply
1.5k
views
Large example data with Bioconductor package
package
updated 7.5 years ago by
shepherl
4.1k • written 7.5 years ago by
Marek Gierlinski
▴ 30
1
vote
0
replies
1.2k
views
News:
Shields/Badges on Package landing pages
package
badges
shields
News
7.6 years ago
shepherl
4.1k
4
votes
7
replies
2.4k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Shian Su
▴ 40
1
vote
7
replies
2.3k
views
Ballgown object construction error
ballgown
scan
error
package
8.0 years ago • updated 7.9 years ago
spaque57
• 0
0
votes
1
reply
2.0k
views
Error in installing ReactomePA
R
package
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
niutster
• 0
0
votes
1
reply
1.5k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 8.2 years ago by
belinda.phipson
▴ 40 • written 8.2 years ago by
evani.radiya.dixit
• 0
0
votes
8
replies
7.3k
views
not able to install bioconductor packages
package
bioconductor
new version
8.2 years ago
farahqureshi5
• 0
0
votes
2
replies
1.3k
views
Weighted matrix from igraph to graphNEL
package
8.5 years ago
antonia91.barile
• 0
0
votes
5
replies
1.9k
views
Using S4Vectors within a package
Package
s4vectors
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
my4
▴ 10
0
votes
1
reply
1.5k
views
How to submit a package hosted on Bitbucket
package
submission
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
richierocks
▴ 40
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Answer: GSVA 1.52.2 (new API) nb of workers?
by
chaneymiller5908958
• 0
@[block blast][1] I'm running into the same issue with the parallelization. [1]: https://blockblastonline.com
Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove
by
macdonaldfrench7286566
• 0
Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
by
Kateřina
• 0
I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!
Comment: GAlignments Cigar to GRanges
by
pineiroalejandro
• 0
Wow, so easy! Thanks for your quick reply.
Comment: EuroBioC2023 abstract submission is open!
by
eilishhill8
• 0
Thanks for sharing this. I got it clearly now. Submit here: [https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/][1] [melon sa…
Votes
Answer: GAlignments Cigar to GRanges
Answer: GAlignments Cigar to GRanges
When running contrasts, does it use normalized read counts?
When running contrasts, does it use normalized read counts?
Importing Salmon counts with tximport with host and virus genomes
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