I just tried to use codelink package to process raw data. I managed to get the expression and SNR values, however i didn't get the Probe ids. I used the below code to load two sample files.
f = list.files(pattern = "TXT") codset = readCodelinkSet(filename = f)
I get the expression values by exprs(codset) and SNR value by getSNR(codset). I tried probNames(), which seem to be like
 "NM_012429.1_PROBE1" "NM_003980.2_PROBE1" "AY044449_PROBE1"  "NM_005015.1_PROBE1" "AB037823_PROBE1" but not like IDs. 1001,1002 and so on
I think i am missing some thing here
pdata = read.AnnotatedDataFrame("targets.txt") codset = readCodelinkSet(filename = pdata$FileName, phenoData = pdata)
What is targets.txt and how to prepare it. How to get the ids