Question: ArrayExpress (finding differential expression using bioconductor+C)
0
gravatar for SSK
4.4 years ago by
SSK10
United Kingdom
SSK10 wrote:

Hello,

I am trying to analyze microarray data (E-BUGS-55 and E-BUGS-56) and determine differential expression. I am not sure if you could guide me to some code that can be used for this purpose. The array design information can be found at:

http://www.ebi.ac.uk/arrayexpress/arrays/A-BUGS-20/

I emailed ArrayExpress earlier and they were extremely helpful! The expression values in the data files are in the same order as the Reporter (probe) and gene IDs in the array design files.

I asked this question earlier (Help with microarray analysis (forming cdf files)) and there appears to be an error when conducting the analysis.

I would really appreciate ur help as I am very new to this field and need this analysis as part of a bigger project. Any information or guidance would be greatly appreciated.

Many thanks!

 

ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by SSK10

I see that the maintainer of ArrayExpress hasn't responded. You might try contacting him directly:

> packageDescription("ArrayExpress")$Main
[1] "Ibrahim Emam <iemam@ebi.ac.uk>"

 

ADD REPLYlink written 4.4 years ago by James W. MacDonald51k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour