Dear Cytoscape users,

I am using Cytoscape (V 2.8.1) with CytoscapeRPC plugin to view large scalenetworks. I am getting the following error.

g <- new ("graphAM", adjMat = adjmat, edgemode="undirected")
cw <- new.CytoscapeWindow ('vignette', graph=g, overwriteWindow=TRUE)

nodes have no label attribute -- adding default labels
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘nodeData<-’ for
signature ‘"graphAM", "matrix", "character"’

Can someone advise me in fixing this error. Thanks... !

The best course -- which we have discussed off-line, and which I believe seems promising to you -- is to switch to the new RCy3 package, currently submitted to Bioc, available on github, and for which we are actively soliciting testers.

If you will send me some more information I will try to reproduce the error you see.  Please send the results of

traceback()   # when the error ocurrs

sessionInfo() 

 - Paul