Bioconductor Rcytoscape

Showing : rcytoscape • reset

votes

replies

3.4k

views

wgcna rcytoscape

updated 7.8 years ago by branislav misovic ▴ 120 • written 7.8 years ago by christopher.clarskon15 ▴ 20

votes

replies

2.2k

views

WGCNA rcytoscape network analysis

updated 7.8 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by christopher.clarskon15 ▴ 20

votes

replies

4.7k

views

rcytoscape r network graphBAM object

updated 8.3 years ago by Dan Tenenbaum ★ 8.2k • written 8.3 years ago by alptaciroglu ▴ 50

votes

replies

1.3k

views

rcytoscape

updated 8.8 years ago by pshannon ▴ 100 • written 8.8 years ago by vmanem ▴ 10

votes

replies

1.4k

views

rcytoscape

updated 8.8 years ago by Dan Tenenbaum ★ 8.2k • written 8.8 years ago by Robert M. Flight ▴ 280

vote

replies

3.2k

views

software error rcytoscape xml

updated 9.4 years ago by drsuuzzz • 0 • written 9.5 years ago by alessandro brozzi ▴ 120

votes

replies

1.1k

views

SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape

10.3 years ago Paul Shannon ▴ 750

votes

replies

2.0k

views

graph RCytoscape graph RCytoscape

updated 10.3 years ago by Paul Shannon ▴ 470 • written 10.3 years ago by Christopher T Gregg ▴ 210

votes

replies

1.7k

views

Network charm RCytoscape Network charm RCytoscape

11.4 years ago Paul Shannon ▴ 750

votes

replies

1.1k

views

RCytoscape RCytoscape

11.4 years ago Paul Shannon ▴ 750

votes

replies

1.1k

views

RCytoscape RCytoscape

12.0 years ago Eleonora Lusito ▴ 10

votes

replies

1.1k

views

GO GLAD RCytoscape GO GLAD RCytoscape

12.0 years ago Paul Shannon ▴ 750

votes

1.3k

views

SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage

updated 12.0 years ago by Tim Triche ★ 4.2k • written 12.0 years ago by Ekta Jain ▴ 370

votes

replies

1.5k

views

graph RCytoscape graph RCytoscape

12.1 years ago Burak Kutlu ▴ 140

votes

replies

835

views

RCytoscape RCytoscape

13.0 years ago Paul Shannon ★ 1.1k

votes

replies

1.3k

views

graph RCytoscape graph RCytoscape

updated 13.4 years ago by Paul Shannon ★ 1.1k • written 13.4 years ago by Chad Burrus ▴ 20

16 results • Page 1 of 1

Recent ...

Replies

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All

Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k