Question: Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
0
gravatar for Shi, Tao
3.9 years ago by
Shi, Tao720
Shi, Tao720 wrote:

Hi list,

Trying to work through the "Preprocessing and genotyping Illumina arrays for copy number analysis" vigenette, but stuck in section 4.2, as I can't find the two functions:  'constructOligoSetFrom' or 'constructOligoSetListFrom' mentioned in this section.  'crlmm' and 'VanillaICE' packages were all properly loaded.

Thanks!

Tao

vanillaice crlmm • 479 views
ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by Shi, Tao720
Answer: Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
0
gravatar for Shi, Tao
3.9 years ago by
Shi, Tao720
Shi, Tao720 wrote:

I found the answer: to get the lrr and baf, one can use the 'calculateRBaf' function.

The vigenettes for crlmm are pretty outdated.  Hopefully the package maintainers can update them.

Thanks!

Tao

 

ADD COMMENTlink written 3.9 years ago by Shi, Tao720
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