Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
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Shi, Tao ▴ 720
@shi-tao-199
Last seen 6.3 years ago

Hi list,

Trying to work through the "Preprocessing and genotyping Illumina arrays for copy number analysis" vigenette, but stuck in section 4.2, as I can't find the two functions:  'constructOligoSetFrom' or 'constructOligoSetListFrom' mentioned in this section.  'crlmm' and 'VanillaICE' packages were all properly loaded.

Thanks!

Tao

crlmm vanillaice • 676 views
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Entering edit mode
Shi, Tao ▴ 720
@shi-tao-199
Last seen 6.3 years ago

I found the answer: to get the lrr and baf, one can use the 'calculateRBaf' function.

The vigenettes for crlmm are pretty outdated.  Hopefully the package maintainers can update them.

Thanks!

Tao

 

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