Question: How can I modify DiffBind correlation plot
gravatar for Gary
2.9 years ago by
Gary0 wrote:

DiffBind is wonderful that can cluster my H3K27ac ChIP-Seq samples very well as below fig1. However, is there any method or other tool I can use to swap the branches? I would like that my samples could be ordered following the time-series, i.e. 24hr and 48 hr on the right, and 6hr, 12hr, and 18hr on the left. In addition, how can I enlarge the text size, i.e. 0h, 6hr, 12hr, 18hr, 24hr, 48hr, and Condition? May I change the color for each Condition? Many thanks.


ADD COMMENTlink modified 2.9 years ago by Rory Stark2.5k • written 2.9 years ago by Gary0
gravatar for Rory Stark
2.9 years ago by
Rory Stark2.5k
CRUK, Cambridge, UK
Rory Stark2.5k wrote:

The colors may be changed directly by setting the colSideCols parameter in dba.plotHeatmap().

If you want to re-order the samples, the best way is to use the correlation matrix returned from dba,plotHeatmap(), re-order it as you wish, and plot your own heatmap (using heatmap(), or heatmap.2(), or heatmap.3()) with the Rowv and Colv parameters set to NA.



ADD COMMENTlink written 2.9 years ago by Rory Stark2.5k
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