Hi there,

I am trying to implement the kTSP algorithm defined in the switchBox package, in matlab but am having some trouble seeing the appropriate source code in R. What source files are used for this algorithm? Right now I have implemented the scoring of the gene pairs (all possible combinations) but can't seem to figure out what to do to break ties. In the papers written about this algorithm, they describe some sort of ranking algorithm but I can't seem to figure out what it is they are doing from the paper. Any help would be appreciated!

Hi Katherine,

The code doing the "hard work" is written in C and called from the R code. I will contact you via email and bring Bahman Afsari who's the one who wrote it and he will definitely help. By the way, Bahaman originally wrote everything using MatLab, so the solution might be easier than expected.

Luigi

Katherine,

send me an email and I'll bring Bahaman in the loop

Luigi