I'm trying to use the makeTxdbfromUCSC() function to create a txdb of exons sorted by genes. It seems the function runs fine, but I just noticed that when I run the function I get a warning message: "Warning message:
In .extractCdsLocsFromUCSCTxTable(ucsc_txtable, exon_locs) :
UCSC data anomaly in 19284 transcript(s): the cds cumulative length is
not a multiple of 3 for transcripts"
Because the coding sequence is not a multiple of 3 for transcripts, could this possibly cause an error in my results because not all the transcripts are created?
Any tips on this or how to fix it would be very appreciated! thank you!