GSEA with variant proportions as input
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Last seen 6.3 years ago
United States

Hello All,

I am interested in using using variant proportions as input to perform Gene Set Enrichment Analysis (GSEA). Is anyone aware of a Bioconductor package/ R package / other tool that can help me do GSEA analysis using variant proportions data as input rather than the typical RNA seq expression data. I have two different phenotype groups which I want to compare and I can have the proportion data transformed if needed. I also intend to combine these results with RNA seq expression data results.

Doing some research, I have come across many papers using p values but I am mainly interested in using variant data input.

Any help would be greatly appreciated. Thanks,


GSEA Variant Proportions Input • 778 views

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