Dear Fellow

 I am analyzing a set of Affymetrix mouse4302 array set. When I come to annotate the differential genes, I biocLite the "mouse4302.db". Then the R automatically starts to install "org.Mn.eg.db". However the process of installation can not be finished and R keep reporting errors as below:

* installing *source* package 'org.Mm.eg.db' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
Error in format.default(x, width = width, justify = if (flag == "-") "left" else "right") : 
  8 arguments passed to .Internal(format) which requires 9
ERROR: installing package indices failed
* removing 'C:/Program Files/R/R-3.2.2/library/org.Mm.eg.db'

Warning messages:

1: running command '"C:/PROGRA~1/R/R-32~1.2/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.2.2\library" C:\Users\asus\AppData\Local\Temp\RtmpSyt8kX/downloaded_packages/org.Mm.eg.db_3.1.2.tar.gz' had status 1 

2: In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘org.Mm.eg.db’ had non-zero exit status

Thank you so much!

Yoki

One or more of your packages was built under R-3.2.1 or earlier, and needs to be updated. 

pkgs = installed.packages()
idx = pkgs[,"Built"] != "3.2.2"
pkgs[idx,]

Probably the immediate problem is AnnotationDbi.

I just refreshed my R and Rstudio, then problem tackled. lol...