I am trying to install RTCGA.mutations package from bioconductor but there appears an error because of `sp` package has different binary and source sotware versions. I've tried many methods to install that package. Does anyone know how to fix this problem?

 

> biocLite("RTCGA.mutations")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.5), R version 3.2.2.
Installing package(s) ‘RTCGA.mutations’
Old packages: 'sp'
Update all/some/none? [a/s/n]: 
a

  There is a binary version available but the source version is later:
   binary source needs_compilation
sp  1.2-0  1.2-1              TRUE

Do you want to install from sources the package which needs compilation?
y/n: y
installing the source package ‘sp’

trying URL 'http://cran.rstudio.com/src/contrib/sp_1.2-1.tar.gz'
Content type 'application/x-gzip' length 1227402 bytes (1.2 MB)
downloaded 1.2 MB

* installing *source* package 'sp' ...
** package 'sp' successfully unpacked and MD5 sums checked
** libs
cygwin warning:
  MS-DOS style path detected: D:/R-32~1.2/etc/x64/Makeconf
  Preferred POSIX equivalent is: /cygdrive/d/R-32~1.2/etc/x64/Makeconf
  CYGWIN environment variable option "nodosfilewarning" turns off this warning.
  Consult the user's guide for more details about POSIX paths:
    http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
gcc -m64 -I"D:/R-32~1.2/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rcentroid.c -o Rcentroid.o
gcc: not found
make: *** [Rcentroid.o] Error 127
Warning: running command 'make -f "D:/R-32~1.2/etc/x64/Makeconf" -f "D:/R-32~1.2/share/make/winshlib.mk" SHLIB="sp.dll" WIN=64 TCLBIN=64 OBJECTS="Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o"' had status 2
ERROR: compilation failed for package 'sp'
* removing 'C:/Users/Marcin/Documents/R/win-library/3.2/sp'
* restoring previous 'C:/Users/Marcin/Documents/R/win-library/3.2/sp'

The downloaded source packages are in
    ‘C:\Users\Marcin\AppData\Local\Temp\RtmpoRaUZq\downloaded_packages’
Warning messages:
1: package ‘RTCGA.mutations’ is not available (for R version 3.2.2) 
2: running command '"D:/R-32~1.2/bin/x64/R" CMD INSTALL -l "C:\Users\Marcin\Documents\R\win-library\3.2" C:\Users\Marcin\AppData\Local\Temp\RtmpoRaUZq/downloaded_packages/sp_1.2-1.tar.gz' had status 1 
3: In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  installation of package ‘sp’ had non-zero exit status
> install.packages('sp')
Installing package into ‘C:/Users/Marcin/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)

  There is a binary version available but the source version is later:
   binary source needs_compilation
sp  1.2-0  1.2-1              TRUE

Do you want to install from sources the package which needs compilation?
y/n: n
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.2/sp_1.2-0.zip'
Content type 'application/zip' length 1562134 bytes (1.5 MB)
downloaded 1.5 MB

package ‘sp’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\Marcin\AppData\Local\Temp\RtmpoRaUZq\downloaded_packages
> biocLite("RTCGA.mutations")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.5), R version 3.2.2.
Installing package(s) ‘RTCGA.mutations’
Old packages: 'sp'
Update all/some/none? [a/s/n]: 
n
Warning message:
package ‘RTCGA.mutations’ is not available (for R version 3.2.2) 
> biocLite("RTCGA.mutations")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.5), R version 3.2.2.
Installing package(s) ‘RTCGA.mutations’
Old packages: 'sp'
Update all/some/none? [a/s/n]: 
a

  There is a binary version available but the source version is later:
   binary source needs_compilation
sp  1.2-0  1.2-1              TRUE

Do you want to install from sources the package which needs compilation?
y/n: n
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.2/sp_1.2-0.zip'
Content type 'application/zip' length 1562134 bytes (1.5 MB)
downloaded 1.5 MB

package ‘sp’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\Marcin\AppData\Local\Temp\RtmpoRaUZq\downloaded_packages
Warning message:
package ‘RTCGA.mutations’ is not available (for R version 3.2.2)