I have RNA seq data for different tissues of non-model insect. I want to visualize the pathway connection between these two tissues. for that I am planning to use pathview. But there is no clear cut example of input data set. I have already mapped my transcripts with drosophilla KEGG database. and I have got list of genes and pathways that are represented by the dataset. it has log fold change data as well. But I am not able to figure out which data I should provide to the pathview?
can someone please tell me what the input data should look like? and if any further information to get maximum out of pathview?
Thank you in advance