Question: no chip information in lumiHumanIDMapping?
0
gravatar for aush
3.8 years ago by
aush40
United States
aush40 wrote:

I was trying to use `IlluminaID2nuID()` and found that for some of my IDs I can't get any information at all (for example, `getChipInfo('ILMN_163950')` gives "No matches were found!" message). Then I noticed that for other IDs I can get info, but this does not include the chip we actually had: for example, `getChipInfo('ILMN_16343', returnAllMatches = TRUE)` gives 8 results, but our chip (HumanHT-12_V4_0_R2_15002873_B) is not among them. When I tried to specify my chip explicitly: getChipInfo(NULL, chipVersion = 'HumanHT-12_V4_0_R2_15002873_B')  - it says "The provided chipVersion does not exist in the library!".

I would be grateful if someone can tell 1) how to list all chips included in the IDMapping libraries, and 2) what to do if my chip is not there.

lumi lumihumanidmapping • 457 views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by aush40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 242 users visited in the last hour