estimateDispersions fails even with fitType local
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sahiilseth • 0
@sahiilseth-9220
Last seen 9.1 years ago
United States

Hi DEXSeq Experts,

I have a dataset with 17 tumor normal pairs, and am trying to explore differential splicing. My first attempt at estimateDispersions failed, so I tried again with fitType="local", now this fails with the following error: 

 

design = ~sample + exon + condition:exon,

> dxd <- estimateDispersions(dxd, fitType="local", BPPARAM = MulticoreParam(18))
using supplied model matrix
Error in .rbind.SummarizedExperiment(args) :
  '...' objects must have the same number of samples

Would great to have your advice on this.

 

 

 

deseq2 dexseq alternative splicing • 1.2k views
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Entering edit mode
@mikelove
Last seen 4 days ago
United States

It might help if you provide the error message for the first attempt as well.

It may have something to do with the number of cores, as rbind is used to collect results after sending to the workers.

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