Hello I have updated biomaRt and now I can not find a way to access ENSEMBL_PLANTS mart.
library(biomaRt)
listMarts()
biomart version
1 ENSEMBL_MART_ENSEMBL Ensembl Genes 82
2 ENSEMBL_MART_SNP Ensembl Variation 82
3 ENSEMBL_MART_FUNCGEN Ensembl Regulation 82
4 ENSEMBL_MART_VEGA Vega 62
5 pride PRIDE (EBI UK)
> sessionInfo() R version 3.2.2 (2015-08-14) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.3 LTS locale: [1] LC_CTYPE=es_MX.UTF-8 LC_NUMERIC=C [3] LC_TIME=es_MX.UTF-8 LC_COLLATE=es_MX.UTF-8 [5] LC_MONETARY=es_MX.UTF-8 LC_MESSAGES=es_MX.UTF-8 [7] LC_PAPER=es_MX.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=es_MX.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] biomaRt_2.26.1 loaded via a namespace (and not attached): [1] IRanges_2.4.4 parallel_3.2.2 DBI_0.3.1 [4] RCurl_1.95-4.7 Biobase_2.30.0 AnnotationDbi_1.32.0 [7] RSQLite_1.0.0 S4Vectors_0.8.3 BiocGenerics_0.16.1 [10] stats4_3.2.2 bitops_1.0-6 XML_3.98-1.3
Before there were around 60 options, I have browsed thru this 5 but I can't find ENSEMBL_PLANTS.
Please Help.
Thanks.
Thank you very much , now, I think, I must change several scripts with the plants.ensembl.org host. You saved my day.