I am trying to build the goseq db for Mycoplasma hyorhinis. Here is what I used: makeOrgPackageFromNCBI(version = "0.0.1", author = "me", maintainer = "me <me@mine.org>", outputDir = ".", tax_id = "1129369", genus = "Mycoplasma", species = "hyorhinis", NCBIFilesDir = "."), but I find the error has following, could you please help me??
Getting data for gene2pubmed.gz
extracting only data for our organism from : gene2pubmed
Getting data for gene2accession.gz
extracting only data for our organism from : gene2accession
Getting data for gene2refseq.gz
extracting only data for our organism from : gene2refseq
Getting data for gene_info.gz
extracting only data for our organism from : gene_info
Getting data for gene2go.gz
extracting only data for our organism from : gene2go
Error in unique(rbind(as.matrix(aliasDat), as.matrix(symbolDat))) :
error in evaluating the argument 'x' in selecting a method for function 'unique': Error in .Method(..., deparse.level = deparse.level) :
number of columns of matrices must match (see arg 2)
Hi,
I edited your post: bug reports belong to the Question category, not the News category. I also added the annotationforge tag. A good practice when using this site is to always tag your question with the names of the packages that the question is related to so the authors/maintainers are notified. Thanks.
H.