I would like to know how to format the macs2 peaks to be used in diffbind package. I have the following files:
I can not use the xls as I am getting an error:
Error in Summary.factor(c(926L, 1085L, 1022L, 998L, 902L, 1360L, 677L, :
‘max’ not meaningful for factors
The contents of xls file are:
chr start end length pileup -log10(pvalue) fold_enrichment -log10(qvalue) name
Thanks in advance.
(And change your sample sheet to show that the files are 'bed', not 'macs' format)
17 months later does Diffbind handles .xls format from MACS2 --broad option ? or do we still have to use your trick ?
Just to know , thanks !
Edit : Seems to work using macs in Peaks Column
if i want to analysis broadpeak ,can i use this file ---macs.xls? and select 'macs' format in the samplesheet now?