Hi All,
New to Bioconductor. I'm having problems installing flowCore
R.Version()
$platform
[1] "x86_64-w64-mingw32"
$version.string
[1] "R version 3.2.2 (2015-08-14)"
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.1), ?biocLite for help
biocLite("flowCore")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.2 (2015-08-14).
Installing package(s) ‘flowCore’
There is a binary version available but the source version is later:
binary source needs_compilation
flowCore 1.36.4 1.36.5 TRUE
Do you want to install from sources the package which needs compilation?
y/n: y
installing the source package ‘flowCore’
trying URL 'https://bioconductor.org/packages/3.2/bioc/src/contrib/flowCore_1.36.5.tar.gz'
Content type 'application/x-gzip' length 12719441 bytes (12.1 MB)
downloaded 12.1 MB
* installing *source* package 'flowCore' ...
** libs
*** arch - i386
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c Hyperlog.cpp -o Hyperlog.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c Logicle.cpp -o Logicle.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:44:80: warning: multi-line comment [-Wcomment]
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c hyperlogTransform.cpp -o hyperlogTransform.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c uint2double.cpp -o uint2double.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.2/include" -DNDEBUG -I"C:/Users/nigel_000/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/nigel_000/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
mkdir -p "C:/Users/nigel_000/Documents/R/win-library/3.2/flowCore/lib/i386"
ar rs "C:/Users/nigel_000/Documents/R/win-library/3.2/flowCore/lib/i386/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
C:\Rtools\gcc-4.6.3\bin\ar.exe: creating C:/Users/nigel_000/Documents/R/win-library/3.2/flowCore/lib/i386/libboost_regex.a
g++ -m32 -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o C:/Users/nigel_000/Documents/R/win-library/3.2/flowCore/lib/i386/libboost_regex.a -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/PROGRA~1/R/R-32~1.2/bin/i386 -lR
collect2: ld returned 5 exit status
no DLL was created
ERROR: compilation failed for package 'flowCore'
* removing 'C:/Users/nigel_000/Documents/R/win-library/3.2/flowCore'
Please help.
Thanks
