Bioconductor Installation

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by hong • 0

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644

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BiocManager installation GEOquery

updated 21 months ago by Basti ▴ 780 • written 21 months ago by surinder.chd90 • 0

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installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb

22 months ago elmfinds • 0

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954

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rtracklayer GenomicRanges Installation

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Johanna • 0

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GRanges packages installation

updated 24 months ago by shepherl 3.8k • written 24 months ago by Eli • 0

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package symlinks directories installation Dropbox

updated 2.1 years ago by Hervé Pagès 16k • written 2.1 years ago by jose ▴ 10

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packages installation Bioconductor updating

updated 2.1 years ago by Marcel Ramos 690 • written 2.1 years ago by jose ▴ 10

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Installation

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by dmahoney • 0

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apple m1 installation silicon

updated 2.3 years ago by Gordon Smyth 50k • written 2.8 years ago by Brian ▴ 90

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DESeq2 Problem installation with

updated 2.8 years ago by Lluís Revilla Sancho ▴ 730 • written 2.8 years ago by Nahid • 0

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hdf5r installation

updated 2.8 years ago by Hervé Pagès 16k • written 2.8 years ago by snp31 • 0

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Installation

updated 2.8 years ago by James W. MacDonald 65k • written 2.8 years ago by gray • 0

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macos installation

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by Joe ▴ 10

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scran installation

3.2 years ago TJ • 0

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installation time machine mran rspm

updated 3.6 years ago by Martin Morgan 25k • written 3.6 years ago by Michael Steinbaugh ▴ 90

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deseq2 bioconductor windows xml installation

updated 3.7 years ago by Michael Love 41k • written 3.7 years ago by sarah3 • 0

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ensembldb package installation BiocManager

updated 3.8 years ago by Kevin Blighe ★ 3.9k • written 3.8 years ago by dylangagler • 0

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Installation Packages Missing

updated 3.8 years ago by Laurent Gatto 1.6k • written 4.0 years ago by sreedta8 ▴ 10

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bioconductor installation proxy BiocManager

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by chen • 0

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DelayedArray warning installation

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by inzirio ▴ 10

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856

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Installation

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by terrylthomas2804 • 0

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installation permission denied RTCGAToolbox TCGAbiolinks

4.0 years ago julia.tutzauer • 0

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R installation packages annotatr biocmanager

4.1 years ago dakarai_esgdaille ▴ 10

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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1.3k

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packages installation GenomeGraphs

updated 4.2 years ago by James W. MacDonald 65k • written 4.2 years ago by alex • 0

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823

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software error installation

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by GENOMIC_region • 0

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goseq installation

4.3 years ago gdalsky ▴ 40

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947

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newpackage vignette installation

updated 4.5 years ago by shepherl 3.8k • written 4.5 years ago by Krutik Patel ▴ 10

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Rhtslib installation error zlib

updated 4.6 years ago by leoadam014 • 0 • written 5.5 years ago by boboshaq • 0

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1.6k

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Genesis Installation

updated 4.7 years ago by Mike Smith ★ 6.5k • written 4.7 years ago by winstondunnmd ▴ 10

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1.6k

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flowCore Installation dependency

updated 4.9 years ago by Jake Wagner ▴ 310 • written 4.9 years ago by Robert Baer ▴ 70

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986

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ChemmineOB Linux Installation

5.1 years ago jandrosavich • 0

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985

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installation

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by thatwasfunny • 0

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1.0k

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installation biocmanager

updated 5.5 years ago by shepherl 3.8k • written 5.5 years ago by Michael Steinbaugh ▴ 90

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1.4k

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biocmanager installation

5.6 years ago Kyle Johnsen ▴ 30

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8.2k

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biocinstaller custom library path installation package installation

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by ariel ▴ 20

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1.1k

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delayedarray bug installation

updated 5.7 years ago by Martin Morgan 25k • written 5.8 years ago by simon.andrews • 0

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1.7k

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ChAMP software error installation

5.9 years ago chxp • 0

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installation minfi bumphunter

updated 6.0 years ago by Peter Hickey ▴ 740 • written 6.0 years ago by muellerf • 0

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installation

6.0 years ago xinfu.xia • 0

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1.2k

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rhstlib installation compilation error

6.0 years ago Ryan C. Thompson ★ 7.9k

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1.7k

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installation phyloseq

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by layeb • 0

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3.4k

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bioconductor biocinstaller installation conda

6.2 years ago jol.espinoz ▴ 40

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bioclite package installation installation install

updated 6.2 years ago by Mike Smith ★ 6.5k • written 6.2 years ago by cristian ▴ 10

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2.8k

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ubuntu installation

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Deleted ▴ 70

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2.6k

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goseq installation

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by philipp.voss • 0

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1.2k

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installation CardinalWorkflows Imaging mass spectrometry Cardinal

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by xander.spotbeen • 0

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biocinstaller root installation installation problem

6.5 years ago charles.tilford ▴ 10

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phyloseq installation ade4 macos

6.5 years ago sprague • 0

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14k

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installation

updated 6.5 years ago by Cheng-Yuan Kao ▴ 100 • written 8.7 years ago by seeker • 0

50 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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