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Question: Annotation missing when using makeTxDbFromGFF
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gravatar for Udi Landau
21 months ago by
Udi Landau20
Udi Landau20 wrote:

Hi,

I am using the instructions from A: Does BSgenome.Dmelanogaster.UCSC.dm2 mountain non-coding RNAs?  to make a GRange object form my TxDb.
I don't see annotation that is in my GFF file (transposable element) and also the numbers of some of the feature are different from those I get using grep on the GFF file.

Any ideas how can I fix that?

Thank you

ADD COMMENTlink written 21 months ago by Udi Landau20
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