Annotation missing when using makeTxDbFromGFF
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Udi Landau ▴ 30
@udi-landau-9726
Last seen 20 months ago

Hi,

I am using the instructions from A: Does BSgenome.Dmelanogaster.UCSC.dm2 mountain non-coding RNAs?  to make a GRange object form my TxDb.
I don't see annotation that is in my GFF file (transposable element) and also the numbers of some of the feature are different from those I get using grep on the GFF file.

Any ideas how can I fix that?

Thank you

makeTxDbFromGFF • 638 views
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