error using humanLLMappingsACCNUM2LL

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Denise Scholtens ▴ 70

@denise-scholtens-852

Last seen 10.2 years ago

Hello all, I am trying to map a set of Genbank accession numbers to LocusLink IDs and get the following error using humanLLMappingsACCNUM2ALL: > get("AF426250",humanLLMappingsACCNUM2LL) Error in get("AF426250", humanLLMappingsACCNUM2LL) : recursive default argument reference I can map the other way from locuslink id to accession number, for example > get("219970",humanLLMappingsLL2ACCNUM) [1] "AF426250" "AW264415" "CN276025" "CV028891" "BF214297" "BF240961" [7] "BF328755" "AW755263" "BI761985" "BC016789" "BC021682" "NM" [13] "BU676996" "CA311201" Has anyone encountered this problem before? Can you tell me how to deal with it? Thanks for your help, Denise ****************************************** Denise Scholtens, Ph.D. Northwestern Medical School Department of Preventive Medicine Chicago, IL [[alternative HTML version deleted]]

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ADD COMMENT • link updated 19.8 years ago by Seth Falcon ★ 7.4k • written 19.8 years ago by Denise Scholtens ▴ 70

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Seth Falcon ★ 7.4k

@seth-falcon-992

Last seen 10.2 years ago

Hi Denise, Can you tell us the R version (R.Version()) as well as the version of humanLLMappings that you have? You can use sessionInfo() to get a quick report on the versions of currently attached packages. On Mar 4, 2005, at 9:08 AM, Denise Scholtens wrote: >> get("AF426250",humanLLMappingsACCNUM2LL) > Error in get("AF426250", humanLLMappingsACCNUM2LL) : > recursive default argument reference We are able to reproduce this error and we will solve it. Thanks for bringing it to our attention. + seth

ADD COMMENT • link 19.8 years ago Seth Falcon ★ 7.4k

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Hi Seth, R 2.0.1 and version 1.6.8 of humanLLMappings. Thanks for looking into this. Denise At 01:47 PM 3/4/2005, you wrote: >Hi Denise, > >Can you tell us the R version (R.Version()) as well as the version of >humanLLMappings that you have? You can use sessionInfo() to get a quick >report on the versions of currently attached packages. > >On Mar 4, 2005, at 9:08 AM, Denise Scholtens wrote: >>>get("AF426250",humanLLMappingsACCNUM2LL) >>Error in get("AF426250", humanLLMappingsACCNUM2LL) : >> recursive default argument reference > >We are able to reproduce this error and we will solve it. > >Thanks for bringing it to our attention. > >+ seth > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor ****************************************** Denise Scholtens, Ph.D. Northwestern Medical School Department of Preventive Medicine 680 N. Lake Shore Drive Suite 1102 Chicago, IL 60614 phone: 312.503.7261 fax: 312.908.9588 dscholtens@northwestern.edu

ADD REPLY • link 19.8 years ago Denise Scholtens ▴ 70

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