--- Zhijin Wu <zwu@jhsph.edu> wrote: > Hi, > > gcrma uses probe sequence information in estimating > non-specific binding > so you need the probepackge. You can create the > probepackge if it's not > available on bioconductor. The vignette for > 'matchprobes" package has > description of the function "makeProbePackage". > Here's the link > http://bioconductor.org/repository/devel/vignette/././matchprobes.pdf > > best, > Jean > > > On Tue, 8 Mar 2005, Richard Finney wrote: > > > > > I am having a little trouble torturing gcrma() > > into accepting a custom CDF file created locally. > > (Local in this case is R Ver 2.0.1 on a reasonably > > recent linux box). > > > > I can create and convince R/Bioc to accept > > a custom CDF file in some cases. It works > > fine with rma() and mas5() . But ... gcrma > > uses some "probepackage" thingamajig and goes > > looking out on the internet for some custom > > name for the custom cdf library I created and > > of course does not find it. > > > > What function/method do I need to run to create > > a custom "probe information" file for my custom > > CDF file how do I make gcrma() use this new > > information by looking locally for it and not > > out on the internet? > > > > Help. pleez. > > > > -rich > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > >