Dear BioC members, I am working with yeast2 chip and can't find cdf or annotation package on Bioconductor Metadata page. Have anyone created the yeast2 chip cdf environment? I created a cdfenv based on affymetrix library file, but it is far from complete although I can do RMA with it. In addition, I want to run simpleaffy for QC purpose, but apparently, the .qcEnv does not have yeast2 in it. Generating QC plot from GCOS report is very tedious compared to simpleaffy. Any help will be appreciated. Xiwei Wu, MD, PhD Assistant Research Scientist Department of Biomedical Informatics Beckman Research Insitute City of Hope National Medical Center Duarte, CA 91010 Phone: (626) 359-8111 ext. 65071 "EMF <coh.org>" made the following annotations. ---------------------------------------------------------------------- -------- SECURITY/CONFIDENTIALITY WARNING: This message and any atta...{{dropped}}

Hi there, "Wu, Xiwei" <xwu@coh.org> writes: > I am working with yeast2 chip and can't find cdf or annotation package on > Bioconductor Metadata page. Have anyone created the yeast2 chip cdf > environment? We have yeast2 cdf and probe packages available and I will be posting them shortly (tomorrow). + seth