Reading BAM file for RapidR
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@sushant-pawar-9287
Last seen 5.3 years ago
Nashik

Hi all,

 I want to read the BAM file in R studio for Package RapdiR using this command.

> mask <- "mask.bed"

> makeBinnedCountsFile(bam.file.list = c("file1.bam", "file2.bam"),
+ sampleIDs = c("sample1", "sample2"),
+ binned.counts.fname = output.fname,
+ k = 20000)

so please tell me what should be the input file for this command

 

RapidR BAM • 900 views
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Aaron Lun ★ 27k
@alun
Last seen 10 hours ago
The city by the bay

A Google search indicates that RapidR is not a Bioconductor package, so this forum is not the right place to ask. Perhaps you would be better off contacting the package authors directly.

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