Question: Reading BAM file for RapidR
0
gravatar for Sushant Pawar
3.2 years ago by
Nashik
Sushant Pawar0 wrote:

Hi all,

 I want to read the BAM file in R studio for Package RapdiR using this command.

> mask <- "mask.bed"

> makeBinnedCountsFile(bam.file.list = c("file1.bam", "file2.bam"),
+ sampleIDs = c("sample1", "sample2"),
+ binned.counts.fname = output.fname,
+ k = 20000)

so please tell me what should be the input file for this command

 

bam rapidr • 634 views
ADD COMMENTlink modified 3.2 years ago by Aaron Lun23k • written 3.2 years ago by Sushant Pawar0
Answer: Reading BAM file for RapidR
0
gravatar for Aaron Lun
3.2 years ago by
Aaron Lun23k
Cambridge, United Kingdom
Aaron Lun23k wrote:

A Google search indicates that RapidR is not a Bioconductor package, so this forum is not the right place to ask. Perhaps you would be better off contacting the package authors directly.

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by Aaron Lun23k
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