Problem whith Rgraphviz

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SylvainBrohée ▴ 10

@sylvainbrohee-1145

Last seen 9.6 years ago

Dear all, I tryed to install the Rgraphviz package but I the following message. My version of graphviz is 2.2 (when I type dotneato-config --version) Could somedy help me? Thank you a lot in advance, $R CMD INSTALL Rgraphviz * Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config failed configure: error: please specify a valid path to 'dotneato-config' version >= 1.12 using --with-graphviz=DIR ERROR: configuration failed for package 'Rgraphviz' Sylvain -- Sylvain Broh?e Service de Conformation des Macromol?cules Biologiques et de Bioinformatique (SCMBB) Universit? Libre de Bruxelles Boulevard du Triomphe - CP263 1050 Bruxelles (Belgium) Tel : +32(0)2/650.54.34 Fax : +32(0)2/650.54.25

Rgraphviz Rgraphviz • 1.1k views

ADD COMMENT • link updated 19.1 years ago by SAURIN ★ 1.1k • written 19.1 years ago by SylvainBrohée ▴ 10

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SAURIN ★ 1.1k

@saurin-799

Last seen 9.6 years ago

Hi Brohee, download graphviz 1.12 from AT & T website. Somehow Rgraphviz works nice with graphviz verion 1.12 and configure using below path. ./configure --prefix=/usr --exec-prefix=/usr it should work. Saurin --- Sylvain Brohée <sylvain@scmbb.ulb.ac.be> wrote: > Dear all, > I tryed to install the Rgraphviz package but I the > following message. > My version of graphviz is 2.2 (when I type > dotneato-config --version) > Could somedy help me? > Thank you a lot in advance, > > > $R CMD INSTALL Rgraphviz > * Installing *source* package 'Rgraphviz' ... > checking for graphviz... checking for > dotneato-config... /usr/local/bin/dotneato-config > /usr/local/bin/dotneato-config > failed > configure: error: please specify a valid path to > 'dotneato-config' version >= > 1.12 using --with-graphviz=DIR > ERROR: configuration failed for package 'Rgraphviz' > > Sylvain > -- > Sylvain Brohée > > Service de Conformation des Macromolécules > Biologiques et de Bioinformatique (SCMBB) > Université Libre de Bruxelles > Boulevard du Triomphe - CP263 > 1050 Bruxelles (Belgium) > Tel : +32(0)2/650.54.34 > Fax : +32(0)2/650.54.25 > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Saurin's WebWorld: http://hawkmail.monmouth.edu/~s0451884

ADD COMMENT • link 19.1 years ago SAURIN ★ 1.1k

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> download graphviz 1.12 from AT & T website. Somehow > Rgraphviz works nice with graphviz verion 1.12 > and configure using below path. It also works with Graphviz versions much more up to date then 1.12 :) That being said, I received an email over the weekend indicating that they were having trouble getting Rgraphviz to work against the new Graphviz 2.2 so the OP's email appears to be a confirmation of that. I'll take a look at it. I would recommend using a slightly older version of Graphviz (eg 2.0)

ADD REPLY • link 19.1 years ago Jeff Gentry ★ 3.9k

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At least on OS X, graphviz 2.2 (source build) and RGraphivz 1.5.6 (not 1.5.0) builds and works out of the box. stefano On 14/mar/05, at 16:43, Jeff Gentry wrote: >> download graphviz 1.12 from AT & T website. Somehow >> Rgraphviz works nice with graphviz verion 1.12 >> and configure using below path. > > It also works with Graphviz versions much more up to date then 1.12 :) > > That being said, I received an email over the weekend indicating that > they > were having trouble getting Rgraphviz to work against the new Graphviz > 2.2 > so the OP's email appears to be a confirmation of that. I'll take a > look > at it. > > I would recommend using a slightly older version of Graphviz (eg 2.0) > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >

ADD REPLY • link 19.1 years ago stefano iacus ▴ 430

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