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alex.tamburino
•
0
@alextamburino-10105
Last seen 8.5 years ago
Hi, I am getting the following error. Any ideas? Thanks
>findOverlapsOfPeaks(gr1,gr2) Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : object 'orderInteger' not found > gr1 GRanges object with 6122 ranges and 1 metadata column: seqnames ranges strand | score <Rle> <IRanges> <Rle> | <numeric> X0 1 [ 10076, 10388] + | 7.030091837 X1 1 [ 34857, 34953] + | 16.00229019 X2 1 [137436, 137504] + | 33.09947392 X3 1 [205373, 205469] + | 16.54973696 X4 1 [258727, 258804] + | 27.74514726 ... ... ... ... . ... X6117 Y [56770157, 56770285] + | 9.035775927 X6118 Y [56771048, 56771241] + | 12.33025828 X6119 Y [56827831, 56827998] + | 11.55585383 X6120 Y [56832012, 56832271] + | 8.348097405 X6121 Y [56832585, 56833014] + | 6.87515344
I'd guess that you had a package version mis-match. Does
BiocInstaller::biocValid()
identify packages that are too old or new for the version of Bioconductor you have in use? If so, does it help to follow the suggestions in the output to remedy the situation?