Hi,

Can someone please guide me? I'm trying to install the latest Rsamtools package.

Thanks,

Alex

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> biocLite("Rsamtools")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.21.4), R 3.3.0 beta (2016-04-14 r70485).
Installing package(s) ‘Rsamtools’
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘Rsamtools’
  These will not be installed

In the short term, install the Rtools tool chain for R-3.3.0 (making sure the default installation directory is included in the Windows PATH variable) and add the argument type="source" to biocLite(). The binary version of Rsamtools will be available when it passes the (more or less) nightly builds, hopefully later today but perhaps not until tomorrow or after.