missing probesets when creating cdf package with makecdfenv
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Malick Paye ▴ 20
@malick-paye-1047
Last seen 10.5 years ago
Hello all, I have some problems with the function 'make.cdf.package'. I installed Bioconductor, the affy package as well as the makecdfenv package. Then I tried to create ŕ CDF package using my CDF file, when creating and installing the package everything seems to be ok but when i read my cel files i realise that about 20% of my probesets are missing. If someone met this kind of problem. .. Any help would be greatly appreciate. Malick, --------------------------------- Découvrez nos promotions exclusives "destination de la Tunisie, du Maroc, des Baléares et la Rép. Dominicaine sur Yahoo! Voyages. [[alternative HTML version deleted]]
cdf affy cdf affy • 689 views
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@james-w-macdonald-5106
Last seen 1 day ago
United States
Malick Paye wrote: > Hello all, > > I have some problems with the function 'make.cdf.package'. I > installed Bioconductor, the affy package as well as the makecdfenv > package. Then I tried to create ? CDF package using my CDF file, when > creating and installing the package everything seems to be ok but > when i read my cel files i realise that about 20% of my probesets are > missing. Which version of R, makecdfenv, affy, and what particular CDF? > > If someone met this kind of problem. .. > > Any help would be greatly appreciate. > > Malick, > > > > --------------------------------- D?couvrez nos promotions > exclusives "destination de la Tunisie, du Maroc, des Bal?ares et la > R?p. Dominicaine sur Yahoo! Voyages. [[alternative HTML version > deleted]] > > _______________________________________________ Bioconductor mailing > list Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 10.5 years ago
Hi Malick, > Then I tried to create ? CDF package using my CDF file, when creating > and installing the package everything seems to be ok but when i read > my cel files i realise that about 20% of my probesets are missing. I suspect we'll need a bit more detail from you in order to have a chance of helping. Things like: R Version, Bioconductor package versions, more detail on the steps you took, and so on. + seth
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