Hello, its a bit hard to trace back the error from the information you provided. Could you also show summaries of the objects you have. Or provide a rdd file with the fcf object if it is not too big. Best regards, Felix Am Mi., Apr. 27, 2016 15:25 schrieb snowhune [bioc] : Activity on a post you are following on support.bioconductor.org (https://support.bioconductor.org) User snowhune (snowhune) wrote Question: plotZScores error in FourCSeq (https://support.bioconductor.org/p/81986/): Dear, In "plotZsocres(fcf)", I have a following error: Error in print(tracks(plots, heights = heights, xlim = frags[abs(frags$dist) < : error in evaluating the argument 'x' in selecting a method for function 'print': Error: Objects of type standardGeneric not supported by autoplot. And I got the same error with "plotDifferenes(fcf)". I followed all the vignette procedure and I didn't have any other error. my sessioninfo is: R version 3.2.3 (2015-12-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.7 (Santiago) locale: [1] C attached base packages: [1] splines stats4 parallel stats graphics grDevices utils datasets methods base other attached packages: [1] BSgenome.Mmusculus.UCSC.mm9_1.4.0 BSgenome_1.38.0 rtracklayer_1.30.3 Biostrings_2.38.4 [5] XVector_0.10.0 ggbio_1.18.1 BiocInstaller_1.20.1 TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2 [9] GenomicFeatures_1.22.13 AnnotationDbi_1.32.3 FourCSeq_1.4.0 LSD_3.0 [13] DESeq2_1.10.1 RcppArmadillo_0.6.500.4.0 Rcpp_0.12.4 SummarizedExperiment_1.0.2 [17] Biobase_2.30.0 ggplot2_2.1.0 GenomicRanges_1.22.4 GenomeInfoDb_1.6.3 [21] IRanges_2.4.8 S4Vectors_0.8.11 BiocGenerics_0.16.1 loaded via a namespace (and not attached): [1] locfit_1.5-9.1 biovizBase_1.18.0 lattice_0.20-33 gtools_3.5.0 Rsamtools_1.22.0 plyr_1.8.3 futile.options_1.0.0 [8] acepack_1.3-3.3 RSQLite_1.0.0 zlibbioc_1.16.0 annotate_1.48.0 rpart_4.1-10 Matrix_1.2-4 BiocParallel_1.4.3 [15] geneplotter_1.48.0 stringr_1.0.0 foreign_0.8-66 RCurl_1.95-4.8 biomaRt_2.26.1 munsell_0.4.3 nnet_7.3-12 [22] gridExtra_2.2.1 Hmisc_3.17-2 XML_3.98-1.4 reshape_0.8.5 GenomicAlignments_1.6.3 bitops_1.0-6 RBGL_1.46.0 [29] grid_3.2.3 xtable_1.8-2 GGally_1.0.1 gtable_0.2.0 DBI_0.3.1 magrittr_1.5 scales_0.4.0 [36] graph_1.48.0 stringi_1.0-1 reshape2_1.4.1 genefilter_1.52.1 latticeExtra_0.6-28 futile.logger_1.4.1 Formula_1.2-1 [43] lambda.r_1.1.7 RColorBrewer_1.1-2 tools_3.2.3 dichromat_2.0-0 OrganismDbi_1.12.1 survival_2.38-3 colorspace_1.2-6 [50] cluster_2.0.3 fda_2.4.4 VariantAnnotation_1.16.4 ------------------------------------ Post tags: fourCseq You may reply via email or visit plotZScores error in FourCSeq (plotZScores error in FourCSeq)