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44
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NUPOP usage
TOAST
updated 1 day ago by
shepherl
4.2k • written 1 day ago by
Mohammad
• 0
1
vote
2
replies
244
views
News:
Important: Bioconductor Release 3.22 Delayed
release
written 6 weeks ago by
shepherl
4.2k
0
votes
1
reply
58
views
Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 4 days ago by
Chaoability
• 0
0
votes
2
replies
154
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 7 days ago by
Michael Love
43k • written 9 days ago by
Benjamin
• 0
0
votes
1
reply
131
views
PTM analysis in LIMPA
limpa
updated 8 days ago by
Gordon Smyth
53k • written 9 days ago by
Diego FGR
• 0
1
vote
0
replies
137
views
News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
mart
biomaRt
ensembldb
10 days ago
Ensembl_Jorge
▴ 10
0
votes
2
replies
170
views
problem reading bam files into nucleR
nucleR
updated 10 days ago by
James W. MacDonald
68k • written 14 days ago by
efoss
▴ 10
0
votes
0
replies
13
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
TOAST
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
8
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
3
votes
6
replies
660
views
Highly similar RNA-seq samples in PCA - pooling or technical duplication?
RNASeq
DESeq2
DifferentialExpression
RNASeqData
written 22 days ago by
Ahmed Salah
• 0
0
votes
1
reply
1.2k
views
two questions about limma
Microarray
limma
Microarray
limma
updated 13 days ago by
Gordon Smyth
53k • written 18.8 years ago by
De-Jian ZHAO
▴ 240
0
votes
1
reply
132
views
Question about DESeq2 Design for Paired Treatment Study
DESeq2
updated 12 days ago by
ATpoint
★ 5.0k • written 13 days ago by
Junmo
• 0
0
votes
0
replies
63
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
16 days ago
laurah ondari
• 0
0
votes
0
replies
73
views
PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
17 days ago
bolusharris
• 0
0
votes
1
reply
132
views
DECIPHER DesignProbes unable to design FISH-probes
decipher
FISH
DECIPHER
FISH-probe
probe-design
updated 5 days ago by
Erik Wright
▴ 150 • written 18 days ago by
vreinmuth
• 0
0
votes
2
replies
1.2k
views
p.adjust BH Question
written 14.3 years ago by
David Young
▴ 10
1
vote
4
replies
321
views
Large logFC but somewhat high FDR
limpa
18 days ago • updated 10 days ago
JKim
• 0
0
votes
1
reply
107
views
Job:
Bioinformatician at the Lausanne University Hospital
GenomicRanges
JobPosting
written 18 days ago by
story.benjamin
▴ 20
3
votes
5
replies
407
views
upstream git branches of bioc-release
Bioconductor
written 19 days ago by
Jeroen
▴ 10
0
votes
2
replies
144
views
limpa - drivers for unusually high standard error?
limpa
updated 19 days ago by
Gordon Smyth
53k • written 19 days ago by
Julia Broadbent
• 0
1
vote
4
replies
1.9k
views
How can I correctly use phyloseq with Docker?
phylo
phyloseq
Docker
updated 11 hours ago by
fnfgame
• 0 • written 7 months ago by
Franz Bachmann
• 0
0
votes
1
reply
391
views
Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
flowWorkspace
FlowCytometry
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Valeria
• 0
0
votes
2
replies
1.1k
views
Install old version of DESeq2
apeglm
Install
DESeq2
version
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Asma
• 0
0
votes
1
reply
361
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Sabina
• 0
0
votes
2
replies
346
views
ORFik: spliced 5utr regions
splicing
5utr
ORFik
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
luna.picello
• 0
0
votes
2
replies
393
views
BiocManager::install() doesn't work
Install
Biocond
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
flying_breadman
• 0
0
votes
2
replies
316
views
Results with PON give more variants
mutect2
variants
pon
written 4 months ago by
ramiro.barrantes
▴ 10
0
votes
1
reply
263
views
Empty boxes in treemap plot rrvgo package
rrvgo
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Asma
• 0
0
votes
1
reply
259
views
CRISPRSeek Question: changing weight and gRNA.size causes error
CRISPRseek
CRISPR
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Citrus
• 0
0
votes
2
replies
427
views
Feedback needed on new user-friendly BED file tool
bedbaser
offtopic
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
nadia
• 0
0
votes
1
reply
236
views
sigDF object in sesame
sesame
sesameData
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Ramiro
• 0
0
votes
3
replies
360
views
Create consensusMatrix for codon bases
Biostrings
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Hassan
• 0
0
votes
2
replies
430
views
Memory error while running alignments
DECIPHER
Alignment
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Mihir
• 0
1
vote
11
replies
1.6k
views
Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2
scRNAseq
updated 21 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Raya
• 0
0
votes
1
reply
257
views
Finding duplicated entries in GRangesList
GenomicRanges
updated 22 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Marco
• 0
0
votes
1
reply
251
views
DESeq2 on non-RNASeq counts data
DESeq2
updated 22 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
vs
• 0
0
votes
2
replies
431
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 12 days ago by
MarcHintz99
• 0 • written 12 weeks ago by
Rui
• 0
0
votes
1
reply
505
views
Problem with the TMB plot
Bioconductor
updated 22 days ago by
Kevin Blighe
★ 4.0k • written 12 weeks ago by
nayanajose
• 0
0
votes
1
reply
274
views
mzR-Rcpp compiler version issue
Rcpp
Perseus
mzR
updated 24 days ago by
Laurent Gatto
1.6k • written 3 months ago by
bniego
• 0
2
votes
3
replies
501
views
DESeq2 design for haplotype MPRA
Bioconductor
written 8 weeks ago by
Rita
• 0
0
votes
1
reply
210
views
Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
scRNAseq
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 4 weeks ago by
leixu0212
• 0
0
votes
0
replies
232
views
Corrupted SQLite while trying to install PANTHER.db?
SQLite
PANTHER.db
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Alan
• 0
0
votes
1
reply
317
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 3 months ago by
Adam Munhall
• 0
0
votes
1
reply
307
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment
singlecelle
scRNAseq
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Francesco Silvestro
• 0
0
votes
1
reply
322
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Jesus
• 0
0
votes
2
replies
316
views
3-factor DESeq2 trime-series analysis
time-series
DESeq2
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
gogeni5529
• 0
0
votes
1
reply
265
views
Questions about pseudo counts from RUVSeq
RUVSeq
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Yuxiang
• 0
46,693 results • Page
1 of 934
Recent ...
Replies
Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
TikTsoksocissalpc
• 0
Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…
Comment: p.adjust BH Question
by
TikTsoksocissalpc
• 0
Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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