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updated 1 day ago by 4.2k • written 1 day ago by ▴ 600
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5 days ago • updated 1 day ago jalte.jelsing • 0
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5 days ago nayanajose • 0
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problem for finding soft power for constructing network in WGCNA algorithm
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6 days ago Rui • 0
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updated 5 days ago by 53k • written 8 days ago by • 0
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7 days ago Wolfgang Huber ★ 13k
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motifmatchr
updated 7 days ago by 68k • written 8 days ago by ▴ 30
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9 days ago • updated 7 days ago biomiha ▴ 20
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DESeq2 used with zinbwave weights - Differences on contrasts calculations
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updated 13 hours ago by 53k • written 12 days ago by • 0
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14 days ago • updated 13 days ago gogeni5529 • 0
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0
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1
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254
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Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysis of single-cell RNA-seq data?
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updated 15 days ago by 43k • written 29 days ago by • 0
0
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3
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26 days ago Ludwig Geistlinger ▴ 70
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4 weeks ago Alan • 0
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3
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4
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Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
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46,636 results • Page 1 of 933
Recent ...
Replies
Answer: DESeq2 interactions by prominentmirabel • 0
Good experimental setup! For HP vs CNP, try results(dds_int, contrast=list("pollutionpolluted", "temphot", "pollutionpolluted.temphot")). T…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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