Installing mzMatch - problems with Rcpp versions
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ps1985 • 0
@ps1985-10619
Last seen 8.4 years ago

Dear all,

can someone please help me with that. I am trying to install mzMatch and get the following error message.

* installing *source* package 'mzmatch.R' ...
** R
** preparing package for lazy loading
Warning in fun(libname, pkgname) :
  mzR has been built against a different Rcpp version (0.12.3)
than is installed on your system (0.12.4). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
Error : .onLoad failed in loadNamespace() for 'rJava', details:
  call: fun(libname, pkgname)
  error: JAVA_HOME cannot be determined from the Registry
ERROR: lazy loading failed for package 'mzmatch.R'
* removing 'C:/Users/pschwend/Documents/R/R-3.2.5/library/mzmatch.R'
Warning messages:
1: running command '"C:/Users/pschwend/Documents/R/R-3.2.5/bin/i386/R" CMD INSTALL -l "C:\Users\pschwend\Documents\R\R-3.2.5\library" "mzmatch.R.tar.gz"' had status 1
2: In install.packages(pkgs = "mzmatch.R.tar.gz", repos = NULL, type = "source") :
  installation of package ‘mzmatch.R.tar.gz’ had non-zero exit status

Cheers

software error • 795 views
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The problem reported above is about the rJava package, so start by trying to install it -- biocLite('rJava'). It looks like it will fail to find a variable JAVA_HOME in the Windows registry. This could mean that Java is not installed, or is installed incorrectly -- have you installed Java (google for 'java windows install')?

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