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ps1985
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@ps1985-10619
Last seen 8.4 years ago
Dear all,
can someone please help me with that. I am trying to install mzMatch and get the following error message.
* installing *source* package 'mzmatch.R' ... ** R ** preparing package for lazy loading Warning in fun(libname, pkgname) : mzR has been built against a different Rcpp version (0.12.3) than is installed on your system (0.12.4). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue. Error : .onLoad failed in loadNamespace() for 'rJava', details: call: fun(libname, pkgname) error: JAVA_HOME cannot be determined from the Registry ERROR: lazy loading failed for package 'mzmatch.R' * removing 'C:/Users/pschwend/Documents/R/R-3.2.5/library/mzmatch.R' Warning messages: 1: running command '"C:/Users/pschwend/Documents/R/R-3.2.5/bin/i386/R" CMD INSTALL -l "C:\Users\pschwend\Documents\R\R-3.2.5\library" "mzmatch.R.tar.gz"' had status 1 2: In install.packages(pkgs = "mzmatch.R.tar.gz", repos = NULL, type = "source") : installation of package ‘mzmatch.R.tar.gz’ had non-zero exit status
Cheers
The problem reported above is about the rJava package, so start by trying to install it -- biocLite('rJava'). It looks like it will fail to find a variable JAVA_HOME in the Windows registry. This could mean that Java is not installed, or is installed incorrectly -- have you installed Java (google for 'java windows install')?