Question: affyPLM boxplots for subset of samples

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Juliet Hannah •

**360**wrote:I have hundreds of arrays for which I would like to obtain NUSE and RLE plots. I would like to make one call to affyPLM, but then plot a subset (boxplot), perhaps a few random samples that cover the entire set. Otherwise, there will be too many samples to show effectively in one boxplot. What is a way to go about this? Example below taken from affyPLM vignette.

require(affydata) library("affyPLM") data(Dilution) Dilution = updateObject(Dilution) Pset <- fitPLM(Dilution) boxplot(Pset)

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modified 3.1 years ago
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James W. MacDonald ♦

**50k**• written 3.1 years ago by Juliet Hannah •**360**