Analyzing a continuous phenotype using DESeq2
0
0
Entering edit mode
pjgalli2 • 0
@pjgalli2-11068
Last seen 8.4 years ago

Hello.  Is it possible to analyze a continuous phenotype with DESeq2, without grouping into factors?  I receive this note when I run the default DESeq function:

-- note: fitType='parametric', but the dispersion trend was not well captured by the
   function: y = a/x + b, and a local regression fit was automatically substituted.
   specify fitType='local' or 'mean' to avoid this message next time.

 

DESeq2 continuous • 1.2k views
ADD COMMENT
0
Entering edit mode

Nevermind.  I had the phenotype coded as factors instead of numeric.  Looks like it's working.

ADD REPLY

Login before adding your answer.

Traffic: 921 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6