Just loaded R and Bioconductor via biocLite. 

source("https://bioconductor.org/biocLite.R")
biocLite(ALL)

Try to do a couple checks and get these errors:

> library(affy)

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 

  there is no package called ‘zlibbioc’

Error: package or namespace load failed for ‘affy’

> library(affycoretools)

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 

  there is no package called ‘S4Vectors’

Error: package or namespace load failed for ‘affycoretools’

A library (reported by .libPaths()) that was available when affy was installed is no longer available. Maybe you installed a new R over an old R? You could try to re-install packages biocLite("affy") or trouble-shoot on your end how the libraries that were there when affy was installed originally are no longer available. Be sure that BiocInstaller::biocValid() reports that packages are current; likely you have a mix of packages for different R and Bioconductor releases.