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Biobase version 1.0 on windows XP...

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Joshua Betcher ▴ 90

@joshua-betcher-19

Last seen 10.2 years ago

This is a multi-part message in MIME format. ------=_NextPart_000_0013_01C1F1F4.F21B3C70 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Hello all, today I downloaded the lastest release of biobase for win32. = I have R version 1.4.1. When I went to the window option to install the package from zip it = installed the file in the correct place. Then when I went to the window = option to load the package I recieved the following error: Loading required package: methods=20 Creating a new generic function for "[[<-" on element=20 2 of the search path=20 Making a generic for special function "[[<-"=20 Creating a new generic function for "[[" on element 2=20 of the search path=20 Making a generic for special function "[["=20 Expanding the signature to include omitted arguments=20 in definition: j =3D "missing"=20 Creating a new generic function for "length" on element=20 2 of the search path=20 Making a generic for special function "length"=20 Creating a new generic function for "[" on element 2=20 of the search path=20 Making a generic for special function "["=20 Error in conformMethod(signature, mnames, fnames) :=20 Method has formal arguments not in generic function: file, = append, quote, sep, eol, na, dec, row.names, col.names, qmethod Error in library(pkg, character.only =3D TRUE) :=20 .First.lib failed because of this error the package could never attach itself. Does = anyone know what the problem could be and how to fix it? Thanks Joshua Betcher ------=_NextPart_000_0013_01C1F1F4.F21B3C70 Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable <html><head> <meta http-equiv="3DContent-Type" content="3D"text/html;" =="" charset="3Diso-8859-1""> <meta content="3D"MSHTML" 6.00.2715.400"="" name="3DGENERATOR"> <style></style> </head> <body bgcolor="3D#ffffff">

Hello all, today I downloaded the = lastest release=20 of biobase for win32. I have R version 1.4.1.

When I went to the window option to = install the=20 package from zip it installed the file in the correct place. Then when I = went to=20 the window option to load the package I recieved the following=20 error:

Loading required package: methods =
Creating a=20 new generic function for "[[<-" on element
2 of the search path=20
Making a generic for special function "[[<-"
Creating a new = generic=20 function for "[[" on element 2
of the search path
Making a = generic for=20 special function "[["
Expanding the signature to include omitted = arguments=20
in definition: j =3D "missing"
Creating a new generic function = for=20 "length" on element
2 of the search path
Making a generic for = special=20 function "length"
Creating a new generic function for "[" on element = 2=20
of the search path
Making a generic for special function "[" =
Error=20 in conformMethod(signature, mnames, fnames) :=20
Method has formal = arguments not=20 in generic function: file, append, quote, sep, eol, na, dec, row.names,=20 col.names, qmethod
Error in library(pkg, character.only =3D TRUE) :=20
.First.lib=20 failed

because of this error the package could = never=20 attach itself. Does anyone know what the problem could be and how = to fix=20 it?

Thanks

Joshua Betcher

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Biobase Biobase • 1.1k views

ADD COMMENT • link updated 22.6 years ago by Anthony Rossini ▴ 530 • written 22.6 years ago by Joshua Betcher ▴ 90

score 0 · Answer 1 · 2002-05-02

You need to either install RSMethods (from www.omegahat.org) or upgrade to 1.5. (I forgot to mention that affy will require 1.5). best, -tony >>>>> "joshua" == Joshua Betcher <jb7gv@virginia.edu> writes: joshua> Hello all, today I downloaded the lastest release of biobase for win32. I have R version 1.4.1. joshua> joshua> When I went to the window option to install the package from zip it installed the file in the correct joshua> place. Then when I went to the window option to load the package I recieved the following error: joshua> joshua> Loading required package: methods joshua> Creating a new generic function for "[[<-" on element joshua> 2 of the search path joshua> Making a generic for special function "[[<-" joshua> Creating a new generic function for "[[" on element 2 joshua> of the search path joshua> Making a generic for special function "[[" joshua> Expanding the signature to include omitted arguments joshua> in definition: j = "missing" joshua> Creating a new generic function for "length" on element joshua> 2 of the search path joshua> Making a generic for special function "length" joshua> Creating a new generic function for "[" on element 2 joshua> of the search path joshua> Making a generic for special function "[" joshua> Error in conformMethod(signature, mnames, fnames) : joshua> Method has formal arguments not in generic function: file, append, quote, sep, eol, na, dec, joshua> row.names, col.names, qmethod joshua> Error in library(pkg, character.only = TRUE) : joshua> .First.lib failed joshua> because of this error the package could never attach itself. Does anyone know what the problem could be and joshua> how to fix it? joshua> joshua> Thanks joshua> Joshua Betcher joshua> -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini@u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my friday location is usually completely unpredictable.)