Question: Methylation and gene expression
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gravatar for Asma rabe
2.8 years ago by
Asma rabe290
Japan
Asma rabe290 wrote:

Hi,

I have methylation data and genes expression data with different samples size. For example(10 methylation samples,15 gene expression samples).

I identified DMRs using bump hunter in minfi package. I want to integrate gene expression and methylation data using DMRs identified using bump hunter.

I found bioconductor packages that can do integration for methylation and gene expression like MethylMix and methylAnalysis but both packages do methylation analysis from scratch and identify DMRs.

Is there a way to use my identified DMRs with gene expression data considering that i have different sample size for both platforms??

Thank you in advance.

 

 

geneexpression methylation • 521 views
ADD COMMENTlink written 2.8 years ago by Asma rabe290
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