I am running SeqPlots via Bioconductor in R, via a browser-based interface. I uploaded my wig file without any issues. When I tried to upload my BED file of 23245 genes I got the following error.
Chromosome names provided in the file does not match ones defined in reference genome.
GENOME: [chr1, chr2, chr3, chr4, chr5, ...]
I looked for other reference genomes at the Bioconductor website, but BSgenome.Hsapiens.UCSC.hg19 seems to be the only appropriate one (genome version hg19). Is chromosome X not included in BSgenome.Hsapiens.UCSC.hg19?
Thank you for your help.