Question

deseq2 for calculating qvalue with two replications per group

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zhdorothy5 • 0

@zhdorothy5-11546

Last seen 9.2 years ago

I've tried to calculate the qvalue with a dataset like wt1, wt2, mt1, mt2. Each group has two replicates. And all the qvalue I've got were 1. However, I've check some information on the website, it is said that DESeq2 requires the minimum replicates is two. So I am confusing why all the qvalue are 1.

deseq2 • 732 views

ADD COMMENT • link updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by zhdorothy5 • 0

score 0 · Answer 1 · 2016-09-26

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Michael Love 43k

@mikelove

Last seen 11 days ago

United States

Check the posting guide for the Bioconductor support site and try to add some detail to your post, including the code you used, any messages that were printed by R and the comparisons you are making.

ADD COMMENT • link 9.2 years ago Michael Love 43k