source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
> biocLite("Rsubread")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.22.3), R 3.3.1 (2016-06-21).
Installing package(s) ‘Rsubread’
Package which is only available in source form, and may need compilation of C/C++/Fortran:
‘Rsubread’
These will not be installed
Old packages: 'curl', 'GenomicRanges', 'jsonlite', 'memuse', 'mgcv', 'foreign', 'lattice', 'Matrix',
'mgcv', 'survival'
Update all/some/none? [a/s/n]:
a
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/curl_2.1.zip'
Content type 'application/zip' length 4670295 bytes (4.5 MB)
downloaded 4.5 MB
trying URL 'https://bioconductor.org/packages/3.3/bioc/bin/windows/contrib/3.3/GenomicRanges_1.24.3.zip'
Content type 'application/zip' length 2726496 bytes (2.6 MB)
downloaded 2.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/jsonlite_1.1.zip'
Content type 'application/zip' length 1149744 bytes (1.1 MB)
downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/memuse_3.0-1.zip'
Content type 'application/zip' length 582892 bytes (569 KB)
downloaded 569 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/mgcv_1.8-15.zip'
Content type 'application/zip' length 2337960 bytes (2.2 MB)
downloaded 2.2 MB
package ‘curl’ successfully unpacked and MD5 sums checked
package ‘GenomicRanges’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘memuse’ successfully unpacked and MD5 sums checked
package ‘mgcv’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\DiaCarta-3125\AppData\Local\Temp\RtmpewCSzD\downloaded_packages
Warning in install.packages(update[instlib == l, "Package"], l, repos = repos, :
'lib = "C:/Program Files/R/R-3.3.1/library"' is not writable
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/foreign_0.8-67.zip'
Content type 'application/zip' length 286367 bytes (279 KB)
downloaded 279 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/lattice_0.20-34.zip'
Content type 'application/zip' length 730015 bytes (712 KB)
downloaded 712 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/Matrix_1.2-7.1.zip'
Content type 'application/zip' length 2752582 bytes (2.6 MB)
downloaded 2.6 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/mgcv_1.8-15.zip'
Content type 'application/zip' length 2337960 bytes (2.2 MB)
downloaded 2.2 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/survival_2.39-5.zip'
Content type 'application/zip' length 4813564 bytes (4.6 MB)
downloaded 4.6 MB
package ‘foreign’ successfully unpacked and MD5 sums checked
package ‘lattice’ successfully unpacked and MD5 sums checked
package ‘Matrix’ successfully unpacked and MD5 sums checked
package ‘mgcv’ successfully unpacked and MD5 sums checked
package ‘survival’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\DiaCarta-3125\AppData\Local\Temp\RtmpewCSzD\downloaded_packages
library(Rsubread)
Error in library(Rsubread) : there is no package called ‘Rsubread’
> install.packages('Rsubread')
Installing package into ‘C:/Users/DiaCarta-3125/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘Rsubread’ is not available (for R version 3.3.1)
