How to plot the graph object
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Yilin Liu ▴ 40
@yilin-liu-1232
Last seen 7.2 years ago
It is said that the Rgraphviz package does not work under Windows environment. Then how to plot the graph in R with the use of graph package.
graph Rgraphviz graph Rgraphviz • 563 views
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@sean-davis-490
Last seen 7 weeks ago
United States
On May 6, 2005, at 6:43 AM, Yilin Liu wrote: > It is said that the Rgraphviz package does not work under Windows > environment. > Then how to plot the graph in R with the use of graph package. > The Rgraphviz package depends on the graphviz libraries, which I think is the issue and cannot be resolved in Windows. The whole topic is covered pretty extensively in the bioconductor archive thread starting here: http://files.protsuggest.org/biocond/html/3390.html Sean
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Hi, On Windows, you can install the windows version of graphviz (available at www.graphviz.org) and then serialze your plots, from R to GXL (using tools from the graph package - toGXL or dumpGXL), and then open the resultant files with graphviz. If so inclined you can (I have heard) suitably automate the process. Robert On May 6, 2005, at 3:51 AM, Sean Davis wrote: > > On May 6, 2005, at 6:43 AM, Yilin Liu wrote: > >> It is said that the Rgraphviz package does not work under Windows >> environment. >> Then how to plot the graph in R with the use of graph package. >> > > The Rgraphviz package depends on the graphviz libraries, which I think > is the issue and cannot be resolved in Windows. The whole topic is > covered pretty extensively in the bioconductor archive thread starting > here: > > http://files.protsuggest.org/biocond/html/3390.html > > Sean > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > > +--------------------------------------------------------------------- -- ----------------+ | Robert Gentleman phone: (206) 667-7700 | | Head, Program in Computational Biology fax: (206) 667-1319 | | Division of Public Health Sciences office: M2-B865 | | Fred Hutchinson Cancer Research Center | | email: rgentlem@fhcrc.org | +--------------------------------------------------------------------- -- ----------------+
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@dirk-koschuetzki-1241
Last seen 7.2 years ago
Hello, On Fri, 06 May 2005 12:43:05 +0200, Yilin Liu <y.liu@mdx.ac.uk> wrote: > It is said that the Rgraphviz package does not work under Windows > environment. > Then how to plot the graph in R with the use of graph package. A different way is possible via the SNA package (from cran): require(graph) require(sna) require(Rgraphviz) data(biocRepos) ## Does not work on windows... (does it? untested!) plot(biocRepos) ## Nice layouts with SNA package: gplot(as(biocRepos,"matrix"), mode="kamadakawai") gplot3d(as(biocRepos,"matrix"), mode="kamadakawai") There are several layout argorithms ("modes") available. Cheers, Dirk
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