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Hello!
When I do DE analysis of my RNA-seq data I often have 3-4 replicates of each condition. So, I want present heatmap contaning only condition1_vs_condition_2.
I realize that it will not contain information about variations between replicates but I think it will be easy for understanding.
Thank you in advance,
Alexander Gopanenko
By replicates are these technical or biological replicates? I would never combine biological replicates in a heatmap, especially as you have only 2 conditions I can't see the point in that.