Question: LIMMA: how to assign file name
0
14.3 years ago by
Guoneng Zhong180
Guoneng Zhong180 wrote:
Hi, In limma there is this plot function: plotMA3by2 It's great. But it doesn't seem to allow me to assign a file name. And it ignores any jpeg or other device calls before it where i could assign a filename. It is writing to the current directory, which I have no write privelege to. So any idea how I can assign a filename? Thanks, g -- Systems Programmer Yale Center for Medical Informatics fax: 203-737-5708
limma assign • 524 views
modified 7 months ago by Bioconductor Community ♦♦ 0 • written 14.3 years ago by Guoneng Zhong180
Answer: LIMMA: how to assign file name
0
14.3 years ago by
United States
James W. MacDonald50k wrote:
Guoneng Zhong wrote: > Hi, > > In limma there is this plot function: plotMA3by2 It's great. But it doesn't > seem to allow me to assign a file name. And it ignores any jpeg or other device > calls before it where i could assign a filename. It is writing to the current > directory, which I have no write privelege to. So any idea how I can assign a > filename? The plotMA3by2() function is quite simple, so it would be relatively simple to modify it to do whatever you like, including adding an argument that directs where to save the file. Try typing plotMA3by2 at an R prompt to see the function. Best, Jim > > Thanks, > g > -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
Answer: LIMMA: how to assign file name
0
14.3 years ago by
Gordon Smyth38k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth38k wrote:

You can a filename and path via the 'prefix' argument, e.g.,

plotMA3by2(MA, prefix="/mydir/MA")


Gordon

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